PoplarV1, Main, Exploration, bibRecord, 002809

Acinetobacter puyangensis sp. nov., isolated from the healthy and diseased part of Populus xeuramericana canker bark.

Identifieur interne : 002809 ( Main/Exploration ); précédent : 002808; suivant : 002810

Acinetobacter puyangensis sp. nov., isolated from the healthy and diseased part of Populus xeuramericana canker bark.

Auteurs : Yong Li [République populaire de Chine] ; Chun-Gen Piao [République populaire de Chine] ; Yu-Chao Ma [République populaire de Chine] ; Wei He [République populaire de Chine] ; Hai-Ming Wang [République populaire de Chine] ; Ju-Pu Chang [République populaire de Chine] ; Li-Min Guo [République populaire de Chine] ; Xi-Zhuo Wang [République populaire de Chine] ; Shou-Jiang Xie [République populaire de Chine] ; Min-Wei Guo [République populaire de Chine]

Source :

International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2013.

RBID : pubmed:23396716

Descripteurs français

KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (analyse), Acinetobacter (classification), Acinetobacter (génétique), Acinetobacter (isolement et purification), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Données de séquences moléculaires (MeSH), Gènes bactériens (MeSH), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Écorce (microbiologie).
MESH :
- analyse : Acides gras.
- génétique : ADN bactérien, ARN ribosomique 16S, Acinetobacter.
- isolement et purification : Acinetobacter.
- microbiologie : Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Données de séquences moléculaires, Gènes bactériens, Phylogenèse, Techniques de typage bactérien.
Wicri :
- geographic : République populaire de Chine.

English descriptors

KwdEn :
- Acinetobacter (classification), Acinetobacter (genetics), Acinetobacter (isolation & purification), Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (analysis), Genes, Bacterial (MeSH), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Plant Bark (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH).
MESH :
- chemical , analysis : Fatty Acids.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- geographic : China.
- classification : Acinetobacter.
- genetics : Acinetobacter.
- isolation & purification : Acinetobacter.
- microbiology : Plant Bark, Populus.
- Bacterial Typing Techniques, Base Composition, Genes, Bacterial, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.

Abstract

Two Gram-negative, non-motile, rod-shaped strains, BQ4-1(T) and NHI3-2, isolated respectively from the healthy and diseased part of Populus ×euramericana canker bark, were characterized using a polyphasic approach. Chemotaxonomic characterization supported the inclusion of the two strains in the genus Acinetobacter, with genomic DNA G+C contents (42.5-43 mol%) within the range observed for this genus (38-47 mol%) and 9-octadecenoic acid (C18 : 1ω9c, 39.87 %), hexadecanoic acid (C16 : 0, 11.26 %) and summed feature 3 (comprising C16 : 1ω7c/C16 : 1ω6c, 18.90 %) as major fatty acids. Phylogenetic analysis based on 16S rRNA, rpoB and gyrB gene sequences revealed that strains BQ4-1(T) and NHI3 did not cluster with any species with validly published names, and formed a distinct cluster with 99-100 % bootstrap support on three phylogenetic trees within the genus Acinetobacter. Acid was not produced from d-glucose, and haemolysis was not observed on agar media supplemented with sheep erythrocytes. On the basis of phenotypic, genotypic and phylogenetic characteristics, the two strains are considered to represent a novel species of the genus Acinetobacter, for which the name Acinetobacter puyangensis sp. nov. is proposed. The type strain is BQ4-1(T) (= CFCC 10780(T) = JCM 18011(T)).

DOI: 10.1099/ijs.0.047274-0
PubMed: 23396716

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (analysis)</term>
<term>Genes, Bacterial (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Phylogeny (MeSH)</term>
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<term>Populus (microbiology)</term>
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<term>Sequence Analysis, DNA (MeSH)</term>
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<term>ARN ribosomique 16S (génétique)</term>
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<term>Acinetobacter (classification)</term>
<term>Acinetobacter (génétique)</term>
<term>Acinetobacter (isolement et purification)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Gènes bactériens (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Écorce (microbiologie)</term>
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<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Acinetobacter</term>
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<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term>
<term>Écorce</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term>
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</keywords>
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<term>Base Composition</term>
<term>Genes, Bacterial</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Données de séquences moléculaires</term>
<term>Gènes bactériens</term>
<term>Phylogenèse</term>
<term>Techniques de typage bactérien</term>
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<front><div type="abstract" xml:lang="en">Two Gram-negative, non-motile, rod-shaped strains, BQ4-1(T) and NHI3-2, isolated respectively from the healthy and diseased part of Populus ×euramericana canker bark, were characterized using a polyphasic approach. Chemotaxonomic characterization supported the inclusion of the two strains in the genus Acinetobacter, with genomic DNA G+C contents (42.5-43 mol%) within the range observed for this genus (38-47 mol%) and 9-octadecenoic acid (C18 : 1ω9c, 39.87 %), hexadecanoic acid (C16 : 0, 11.26 %) and summed feature 3 (comprising C16 : 1ω7c/C16 : 1ω6c, 18.90 %) as major fatty acids. Phylogenetic analysis based on 16S rRNA, rpoB and gyrB gene sequences revealed that strains BQ4-1(T) and NHI3 did not cluster with any species with validly published names, and formed a distinct cluster with 99-100 % bootstrap support on three phylogenetic trees within the genus Acinetobacter. Acid was not produced from d-glucose, and haemolysis was not observed on agar media supplemented with sheep erythrocytes. On the basis of phenotypic, genotypic and phylogenetic characteristics, the two strains are considered to represent a novel species of the genus Acinetobacter, for which the name Acinetobacter puyangensis sp. nov. is proposed. The type strain is BQ4-1(T) (= CFCC 10780(T) = JCM 18011(T)).</div>
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<DateCompleted><Year>2013</Year>
<Month>11</Month>
<Day>19</Day>
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<Month>05</Month>
<Day>25</Day>
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<Title>International journal of systematic and evolutionary microbiology</Title>
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<ArticleTitle>Acinetobacter puyangensis sp. nov., isolated from the healthy and diseased part of Populus xeuramericana canker bark.</ArticleTitle>
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</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijs.0.047274-0</ELocationID>
<Abstract><AbstractText>Two Gram-negative, non-motile, rod-shaped strains, BQ4-1(T) and NHI3-2, isolated respectively from the healthy and diseased part of Populus ×euramericana canker bark, were characterized using a polyphasic approach. Chemotaxonomic characterization supported the inclusion of the two strains in the genus Acinetobacter, with genomic DNA G+C contents (42.5-43 mol%) within the range observed for this genus (38-47 mol%) and 9-octadecenoic acid (C18 : 1ω9c, 39.87 %), hexadecanoic acid (C16 : 0, 11.26 %) and summed feature 3 (comprising C16 : 1ω7c/C16 : 1ω6c, 18.90 %) as major fatty acids. Phylogenetic analysis based on 16S rRNA, rpoB and gyrB gene sequences revealed that strains BQ4-1(T) and NHI3 did not cluster with any species with validly published names, and formed a distinct cluster with 99-100 % bootstrap support on three phylogenetic trees within the genus Acinetobacter. Acid was not produced from d-glucose, and haemolysis was not observed on agar media supplemented with sheep erythrocytes. On the basis of phenotypic, genotypic and phylogenetic characteristics, the two strains are considered to represent a novel species of the genus Acinetobacter, for which the name Acinetobacter puyangensis sp. nov. is proposed. The type strain is BQ4-1(T) (= CFCC 10780(T) = JCM 18011(T)).</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Yong</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Beijing Forestry University, The Key Laboratory for Silviculture and Conservation, Ministry of Education, Beijing 100083, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Piao</LastName>
<ForeName>Chun-Gen</ForeName>
<Initials>CG</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ma</LastName>
<ForeName>Yu-Chao</ForeName>
<Initials>YC</Initials>
<AffiliationInfo><Affiliation>Beijing Forestry University, The Key Laboratory for Silviculture and Conservation, Ministry of Education, Beijing 100083, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>He</LastName>
<ForeName>Wei</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Beijing Forestry University, The Key Laboratory for Silviculture and Conservation, Ministry of Education, Beijing 100083, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Hai-Ming</ForeName>
<Initials>HM</Initials>
<AffiliationInfo><Affiliation>Heze Forest Protection Station, Heze 274002, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chang</LastName>
<ForeName>Ju-Pu</ForeName>
<Initials>JP</Initials>
<AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Guo</LastName>
<ForeName>Li-Min</ForeName>
<Initials>LM</Initials>
<AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Xi-Zhuo</ForeName>
<Initials>XZ</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xie</LastName>
<ForeName>Shou-Jiang</ForeName>
<Initials>SJ</Initials>
<AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Guo</LastName>
<ForeName>Min-Wei</ForeName>
<Initials>MW</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>JN664255</AccessionNumber>
<AccessionNumber>JQ411219</AccessionNumber>
<AccessionNumber>JQ411221</AccessionNumber>
<AccessionNumber>JX499272</AccessionNumber>
<AccessionNumber>JX523704</AccessionNumber>
<AccessionNumber>JX523705</AccessionNumber>
<AccessionNumber>JX523706</AccessionNumber>
<AccessionNumber>JX523707</AccessionNumber>
<AccessionNumber>JX523708</AccessionNumber>
<AccessionNumber>JX523709</AccessionNumber>
<AccessionNumber>KC193569</AccessionNumber>
<AccessionNumber>KC193570</AccessionNumber>
<AccessionNumber>KC193571</AccessionNumber>
</AccessionNumberList>
</DataBank>
</DataBankList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2013</Year>
<Month>02</Month>
<Day>08</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000150" MajorTopicYN="N">Acinetobacter</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005798" MajorTopicYN="N">Genes, Bacterial</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2013</Year>
<Month>2</Month>
<Day>12</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2013</Year>
<Month>2</Month>
<Day>12</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2013</Year>
<Month>11</Month>
<Day>20</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">23396716</ArticleId>
<ArticleId IdType="doi">10.1099/ijs.0.047274-0</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<settlement><li>Pékin</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name>
</noRegion>
<name sortKey="Chang, Ju Pu" sort="Chang, Ju Pu" uniqKey="Chang J" first="Ju-Pu" last="Chang">Ju-Pu Chang</name>
<name sortKey="Guo, Li Min" sort="Guo, Li Min" uniqKey="Guo L" first="Li-Min" last="Guo">Li-Min Guo</name>
<name sortKey="Guo, Min Wei" sort="Guo, Min Wei" uniqKey="Guo M" first="Min-Wei" last="Guo">Min-Wei Guo</name>
<name sortKey="He, Wei" sort="He, Wei" uniqKey="He W" first="Wei" last="He">Wei He</name>
<name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name>
<name sortKey="Ma, Yu Chao" sort="Ma, Yu Chao" uniqKey="Ma Y" first="Yu-Chao" last="Ma">Yu-Chao Ma</name>
<name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name>
<name sortKey="Wang, Hai Ming" sort="Wang, Hai Ming" uniqKey="Wang H" first="Hai-Ming" last="Wang">Hai-Ming Wang</name>
<name sortKey="Wang, Xi Zhuo" sort="Wang, Xi Zhuo" uniqKey="Wang X" first="Xi-Zhuo" last="Wang">Xi-Zhuo Wang</name>
<name sortKey="Xie, Shou Jiang" sort="Xie, Shou Jiang" uniqKey="Xie S" first="Shou-Jiang" last="Xie">Shou-Jiang Xie</name>
</country>
</tree>
</affiliations>
</record>

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Acinetobacter puyangensis sp. nov., isolated from the healthy and diseased part of Populus xeuramericana canker bark.

Acinetobacter puyangensis sp. nov., isolated from the healthy and diseased part of Populus xeuramericana canker bark.

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